Release History

All notable changes to this project will be documented in this file.

[2.0.10] - 2019-07-29

Added

• Add genome database for intergenic region (hg19, hg38)
• Add functions for modeling intergenic region
• Add warning message if there is no variant past the feature selection
• Add warning message if there is no variant remained in previous step

Fixed

• Update the UCSC mysql host
• Fix error when modeling empty feature set (step5)
• Fix error when modeling empty feature set (step6)
• Refine PRS plot

[2.0.9] - 2019-12-31

Added

• Add standalone AppGenEpi.app

Fixed

• Fix the bug of joblib multithreading

[2.0.8] - 2019-12-26

Fixed

• Fix unsupported image format for ploting PRS

[2.0.7] - 2019-12-26

Fixed

• Fix executable python for AppGenEpi

[2.0.6] - 2019-12-25

Fixed

• Fix file path bug for ploting PRS

Removed

• Remove unused PIL import

[2.0.5] - 2019-12-24

Added

• Add AppGenEpi (GUI)
• Add polygenic risk score calculation for classifier

[2.0.4] - 2019-12-12

Added

• Add sliding windows scanning to deal with mega genes

[2.0.3] - 2019-10-13

Added

• Add GenEpi’s documentation to Read the Docs
• Add model persistance for classifier and regressor

[2.0.2] - 2019-09-18

Added

• Add multiprocessing for gene batch running

[2.0.1] - 2019-07-12

Added

• Support self-defiend genome regions (for any species)
• Add argument parser (GenEpi -h)
• Add “GenEpi” to bin when installing
• Add output log
• Add quick test
• Add change log in Changelog.md

Changed

• Change feature encoder for reducing memory usage

Removed

• Remove random forest ensemble

[1.0.3] - 2018-04-22

First preview release