GenEpi
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B
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C
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D
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E
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F
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G
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I
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L
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M
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S
A
ArgumentsParser() (in module genepi.GenEpi)
B
BatchSingleGeneEpistasisLasso() (in module genepi.step4_singleGeneEpistasis_Lasso)
BatchSingleGeneEpistasisLogistic() (in module genepi.step4_singleGeneEpistasis_Logistic)
C
ClassifierModelPersistence() (in module genepi.step5_crossGeneEpistasis_Logistic)
(in module genepi.step6_ensembleWithCovariates)
CrossGeneEpistasisLasso() (in module genepi.step5_crossGeneEpistasis_Lasso)
CrossGeneEpistasisLogistic() (in module genepi.step5_crossGeneEpistasis_Logistic)
D
DownloadUCSCDB() (in module genepi.step1_downloadUCSCDB)
E
EnsembleWithCovariatesClassifier() (in module genepi.step6_ensembleWithCovariates)
EnsembleWithCovariatesRegressor() (in module genepi.step6_ensembleWithCovariates)
EstimateAlleleFrequency() (in module genepi.step2_estimateLD)
EstimateLDBlock() (in module genepi.step2_estimateLD)
EstimatePairwiseLD() (in module genepi.step2_estimateLD)
F
FeatureEncoderLasso() (in module genepi.step4_singleGeneEpistasis_Lasso)
FeatureEncoderLogistic() (in module genepi.step4_singleGeneEpistasis_Logistic)
FilterInLoading() (in module genepi.step4_singleGeneEpistasis_Lasso)
(in module genepi.step4_singleGeneEpistasis_Logistic)
fsigmoid() (in module genepi.step5_crossGeneEpistasis_Logistic)
G
gaussian() (in module genepi.step5_crossGeneEpistasis_Logistic)
genepi.GenEpi (module)
genepi.step1_downloadUCSCDB (module)
genepi.step2_estimateLD (module)
genepi.step3_splitByGene (module)
genepi.step4_singleGeneEpistasis_Lasso (module)
genepi.step4_singleGeneEpistasis_Logistic (module)
genepi.step5_crossGeneEpistasis_Lasso (module)
genepi.step5_crossGeneEpistasis_Logistic (module)
genepi.step6_ensembleWithCovariates (module)
GenerateContingencyTable() (in module genepi.step4_singleGeneEpistasis_Logistic)
(in module genepi.step5_crossGeneEpistasis_Logistic)
I
InputChecking() (in module genepi.GenEpi)
L
LassoRegression() (in module genepi.step5_crossGeneEpistasis_Lasso)
LassoRegressionCV() (in module genepi.step4_singleGeneEpistasis_Lasso)
LoadDataForEnsemble() (in module genepi.step6_ensembleWithCovariates)
LogisticRegressionL1() (in module genepi.step5_crossGeneEpistasis_Logistic)
LogisticRegressionL1CV() (in module genepi.step4_singleGeneEpistasis_Logistic)
M
main() (in module genepi.GenEpi)
P
PlotPolygenicScore() (in module genepi.step5_crossGeneEpistasis_Logistic)
R
RandomizedLassoRegression() (in module genepi.step4_singleGeneEpistasis_Lasso)
RandomizedLogisticRegression() (in module genepi.step4_singleGeneEpistasis_Logistic)
RegressorModelPersistence() (in module genepi.step5_crossGeneEpistasis_Lasso)
(in module genepi.step6_ensembleWithCovariates)
S
SingleGeneEpistasisLasso() (in module genepi.step4_singleGeneEpistasis_Lasso)
SingleGeneEpistasisLogistic() (in module genepi.step4_singleGeneEpistasis_Logistic)
SplitByGene() (in module genepi.step3_splitByGene)
SplitMegaGene() (in module genepi.step3_splitByGene)
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